Control track and group visibility more selectively below.
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| Human methylome studies |
| Human methylome studies |
| SRP304130 |
| Impact of exposures to persistent endocrine disrupting compounds on the sperm methylome in regions associated with neurodevelopmental disorders [Sperm] |
| SRP302514 |
| Integrative multiplatform molecular profiling of human colorectal cancer reveals proteogenomic alterations underlying mitochondrial inactivation [The normal adjacent colorectal mucosa was obtained at a distance of 5 cm from the tumor., The normal adjacent colorectal mucosa was obtained at a distance of 6 cm from the tumor., The normal adjacent colorectal mucosa was obtained at a distance of 7 cm from the tumor., Tumor Tissue] |
| SRP056911 |
| DNA methylation in the placentas of typically developing and autistic children [Placenta] |
| SRP299418 |
| cell-free DNA sequencing of plasma [Plasma] |
| SRP298508 |
| Alternative splicing and the epigenome in CML remission [WGBS] [PBMC] |
| SRP298022 |
| DNA hydroxymethylation analysis for target regions in human smooth muscle cells. [Cultured Smooth Muscle] |
| SRP298020 |
| DNA methylation analysis for target regions in human smooth muscle cells. [Cultured Smooth Muscle] |
| SRP293255 |
| DNA Methylation Potential Energy Landscape Analysis of Pediatric Pre-B cell Acute Lymphoblastic Leukemia (ALL) and Normal B cells and precursors [Cell Line, Primary] |
| SRP047086 |
| A public-private-academic consortium, Genome-in-a-Bottle (GIAB), hosted by NIST to develop reference materials and standards for clinical sequencing [B-Lymphocyte] |
| SRP193431 |
| Early detection of lung cancer by deep methylation sequencing of circulating tumor DNA [Plasma] |
| SRP286409 |
| H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination [Bisulfite-seq] [E14, HeLa] |
| SRP286271 |
| Homo sapiens Raw sequence reads [Cervical, Cervical Cancer, Cervical Cancer Adjacent] |
| SRP286180 |
| Comprehensive methylome sequencing reveals prognostic epigenetic biomarkers for prostate cancer mortality [Adjacent Normal, Tumor] |
| SRP282493 |
| DNA methylation maintains integrity of higher order genome architecture (WGBS) [Colorectal] |
| SRP278588 |
| DNA methyation of intragenic CpG islands are required for differentiation from iPSC to NPC [Induced Pluripotent Stem Cell, Induced Pluripotent Stem Cell Derived] |
| SRP278376 |
| Epigenetic Landscape of Pediatric Ependymoma Recurrence [Brain] |
| SRP266653 |
| TNF induced inflammatory transcription dynamics and epigenetic changes [293, HEK 293 transfected with reporter construct, RELA-KO for HEK 293 transfected with reporter construct, TET2 KO for HEK 293 transfected with reporter construct] |
| SRP055494 |
| BLUEPRINT methylome of the HapMap cell line GM18507 (Coriell cell line NA18507) [modified B cell (lymphoblastoid)] |
| SRP273813 |
| Whole genome methylation sequencing of circulating tumor cells (CTCs) in Lung cancer. [Adjacent Normal Tissue, Blood, Lung] |
| SRP272635 |
| Decoding dynamic epigenetic landscapes in human oocytes using single-cell multi-omics sequencing [Somatic] |
| SRP272595 |
| WGBS analysis of various colon cancer cell lines [Colorectal Adenocarcinoma] |
| SRP272481 |
| GATA transcription factors, SOX17 and TFAP2C, drive the human germ-cell specification program [Bisulfite-Seq] [iPSC] |
| SRP271639 |
| Cell-free DNA Methylation and Transcriptomic Signature Prediction of Pregnancies with Adverse Outcomes [WGBS] [Plasma] |
| SRP269389 |
| Targeted intragenic demethylation initiates chromatin rewiring for gene activation [HCC cell line] |
| SRP268783 |
| Acute depletion of CTCF rewires genome-wide chromatin accessibility [B Lineage Acute Lymphoblastic Leukemia SEM cell carrying bi-allelic miniAID-mClover3 knockin tags] |
| SRP267967 |
| Characterization of universal features of partially methylated domains across tissues and species [Breast Tumor, Lung] |
| SRP267867 |
| Human ribosomal DNA (rDNA) epigenetic clock [Blood] |
| SRP057098 |
| A Unique Gene Regulatory Network Resets the Human Germline Epigenome for Development [Gonad] |
| SRP052842 |
| Pleiotropic Analysis of Lung Cancer and Blood Triglycerides [purified AT2] |
| SRP266759 |
| DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumour immunotolerance [BS] [MCF7, SK-MEL-28] |
| SRP266187 |
| Non-CG methylation and multiple epigenetic layers associate child abuse with immune and small GTPase dysregulation [Lateral Amygdala (human brain tissue)] |
| SRP265926 |
| 2-hydroxyglutarate drives whole-genome hypermethylation in kidney cancer cells with inactivated VHL [Cell Line, VHL inactivated clone12, VHL inactivated clone30, VHL inactivated clone44, clone12 exogenous wildtype VHL reintroduced, clone30 exogenous wildtype VHL reintroduced, clone44 exogenous wildtype VHL reintroduced] |
| SRP261643 |
| Comprehensive epigenomic profiling of human alveolar epithelial differentiation identifies key epigenetic states and transcription factor co-regulatory networks for maintenance of distal lung identity [In vitro differentiated AT1-like, purified primary AT2] |
| SRP261501 |
| Tissue-Biased Expansion of DNMT3A-Mutant Clones Associated with Conserved Epigenetic Alterations [Umbilical Cord] |
| SRP260840 |
| Naïve human embryonic stem cells can give rise to cells with trophoblast-like transcriptome and methylome [Bisulfite-Seq] [ESC, Transdifferentiated Human Trophoblast Stem Cell, Trophoblast Stem Cell] |
| SRP259369 |
| Epigenome Dysregulation Resulting from NSD1 mutation in Head and Neck Squamous Cell Carcinoma [Patient-derived head and neck squamous cell carcinoma cell line] |
| SRP259185 |
| Multi-omics analysis reveals divergent epigenetic regulation of gene expression and drivers of esophageal squamous cell carcinoma (WGBS) [Adjacent Normal Esophageal, Esophageal Squamouse Carcinoma] |
| SRP051367 |
| Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (TAB-Seq) [Monocyte-derived dendritic] |
| SRP051366 |
| Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (Bisulfite-Seq) [Monocyte-derived dendritic] |
| SRP254660 |
| H3K27M in Gliomas Causes a One-step Decrease in H3K27 Methylation and Reduced Spreading Within the Constraints of H3K36 Methylation [WGBS] [Cell Line] |
| SRP253922 |
| Long-term expansion with germline potential of human primordial germ cell-like cells in vitro [Bisulfite-seq] [Ovary, iPSC] |
| SRP253848 |
| LiBis: An ultrasensitive alignment method for low-input bisulfite sequencing [Blood, Tumor] |
| SRP251688 |
| Signalling networks constructed by integrative analysis of multi-omics in peripheral blood mononuclear cells in systemic lupus erythematous patients [PBMC] |
| SRP250803 |
| Genome-wide R-loop landscapes during epigenetic programming and reprogramming [ESC, Induced Pluripotent Stem Cell, Mesenchymal Stem Cell, Neural Stem Cell, Vascular Endothelial, Vascular Smooth Muscle] |
| SRP246939 |
| Beta cell-specific CD8+ T cells maintain stem-cell memory-associated epigenetic programs during type 1 diabetes (WGBS) [HAART HIV TN CD8 T cells, Polyclonal Naive CD8 T cell HD, Polyclonal T1D Naive CD8 T cells, Polyclonal TCM CD8 T cells, Polyclonal TEM CD8 T cells, Polyclonal TSCM CD8 T cells, Tetramer+ CD8 T cells, Tetramer+ HAART CD8 T cells, Tetramer+ T1D CD8 T cells] |
| SRP049985 |
| Whole Genome Bisulfite Sequencing (WGBS) of cKIT+ sorted cells from 57-137 day old fetal testes and ovaries. [cKIT+ FACS sort] |
| SRP049710 |
| Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer [Matched Normal, Tumor] |
| SRP049936 |
| DNA methylation in mammalian placentas [Cerebrum, Cord Blood, Extraembryonic Membrane, Placenta, Trophoblasts] |
| SRP049782 |
| Targeted disruption of DNMT1, 3A and 3B in human embryonic stem cells [WGBS] [ES] |
| SRP239226 |
| Principles of Signalling Pathway Modulation for Enhancing Human Naïve Pluripotency Induction [WGBS] [ESC] |
| SRP238023 |
| Reliable tumor detection using cerebrospinal fluid cell-free DNA methylomes in pediatric medulloblastoma [Blast, Cerebellum, Tumor Tissue, cerebrospnial fluid from Hydrocephalus patient] |
| SRP237955 |
| Molecular atlas of fetal and adult human liver sinusoidal endothelial cells: a F8 secreting cell [methylation III] [Hepatic Sinusoidal Endothelial] |
| SRP230221 |
| Chromatin dynamics reveal circadian control of human in vitro islet maturation [WGBS] [Primary Adult Alpha, Primary Adult Beta, hPSC-derived beta, hPSC-derived definitive endoderm, hPSC-derived endocrine progenitor, hPSC-derived pancreatic progenitor 1, hPSC-derived pancreatic progenitor 2, hPSC-derived poly-hormonal] |
| SRP048896 |
| Genome-wide profiling of the DNA methylation landscape at base-pair resolution in human acute myeloid leukemia cell lines. [AML] |
| SRP048844 |
| Genome-wide profiling of DNA methylation at single-base resolution based on MeDIP-bisulfite high-throughput sequencing and ridge regression (MethyC + MeDIP) [Ovarian Epithelial] |
| SRP048761 |
| Dissecting neural differentiation regulatory networks through epigenetic footprinting [ES-derived neural progenitor] |
| SRP233253 |
| Comparison of EM-seq and WGBS results [B-Lymphocyte, Lung, Plasma] |
| SRP230793 |
| Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes [Cord Blood] |
| SRP230618 |
| Differential DNA methylation profiles of HS ILAE type 1 in human temporal lobe epilepsy [Brain Hippocampus] |
| SRP229996 |
| Stem and effector CD8 T-cells from human cancers [Blood, Kidney Tumor] |
| SRP226234 |
| An ExtendedCulture System that Supports Human Primordial Germ Cell-Like Cells Survival and Initiation of DNA Methylation Erasure [ESC] |
| SRP224808 |
| Whole genome bisulfite sequencing of human spermatozoa reveals differentially methylated patterns from type 2 diabetic patients [Semen] |
| SRP045902 |
| Resetting Transcription Factor Control Circuitry Towards Ground State Pluripotency In Human [ESC] |
| SRP223055 |
| Tibetan humans Raw sequence reads [Blood] |
| SRP223612 |
| Whole Genome Bisulfite sequencing: Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs [Bladder Cell Line, Blood, Bone Marrow, Brain, Breast (Primary Tissue), Breast Cell Line, Cell Line, Liver, Lymph Node, Placenta, Placenta Maternal] |
| SRP221227 |
| Persistent epigenetic memory impedes rescue of the telomeric phenotype in human ICF iPSCs following DNMT3B correction [iPSC] |
| SRP220230 |
| Human, Chimpanzee, Gorilla, Orangutan, Macaque Epigenomics [LCL] |
| SRP220467 |
| Human embryonic stem cell-derived organoidal retinoblastoma reveals cancerous origin and therapeutic target [Retina, Tumor] |
| SRP219798 |
| Regulation of DNA Methylation at Enhancers by TET2 Finetunes Gene Transcription in ERa-Positive Breast Cancer Cells [MCF7] |
| SRP045269 |
| Global loss of DNA methylation uncovers intronic enhancers in genes [Colorectal Cancer Cell Line] |
| SRP217135 |
| Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing [WGBS] [Blood, White Blood] |
| SRP217139 |
| Lactate mediated epigenetic reprogramming during cancer associated fibroblast formation [CAF, MSC] |
| SRP215940 |
| The DNA methylomes of hyper-IgM syndrome type 2 B cells provide insights into the roles of activation-induced deaminase prior to the germinal center reaction [Non-Class-Switched Memory B Cells, naive B cell] |
| SRP213665 |
| The strand-biased mitochondrial DNA methylome and its regulation by DNMT3A [HEK293T_WGBS] [HEK293T] |
| SRP213117 |
| Single-cell transcriptome analysis of uniparental embryos reveals parent-of-origin effects on human preimplantation development [methylation] [Embryo] |
| SRP043461 |
| The effects of the global loss of DNA methylation on the functional cancer epigenome (Bisulfite-seq) [DKO1, HCT116] |
| SRP198282 |
| Hammer-seq to measure kinetics of DNA methylation maintenance in HeLa cells [Cervix, Inner Cell Mass] |
| SRP199200 |
| CATACOMB: an endogenous inducible gene that antagonizes H3K27 methylation activity of Polycomb Repressive complex 2 via a H3K27M-like mechanism [HEK293T] |
| SRP193843 |
| DNMT1 drives 4D genome rewiring during oncogene induced senescence [WI-38hTERT/GFP-RAF1-ER] |
| SRP198624 |
| Whole genome bisulfite sequencing of esophagus squamous cell carcinoma [Esophagus] |
| SRP194341 |
| Whole-exome, transcriptome and epigenome data for homo sapiens from normal to dysplasia to colorectal cancer [Colon] |
| SRP021039 |
| Selective demethylation and altered gene expression are associated with ICF Syndrome in human induced pluripotent stem cells and mesenchymal stem cells [Induced Pluripotent Stem Cell] |
| SRP065930 |
| HX1 [Blood] |
| SRP193115 |
| ATAC-Me captures spatiotemporal dynamics of DNA methylation across the chromatin accessible genome [THP-1 Monocyte] |
| SRP192966 |
| Gene expression, methylome and splicing of THP-1 monocytic cells and THP-1-derived macrophage [Monocytic Cell Line] |
| SRP028804 |
| The DNA methylation landscape of human early embryos [Embryo] |
| SRP187153 |
| Comparison of methylome data generated with HiSeq X Ten and NovaSeq [IMR90] |
| SRP041984 |
| Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms [Fibroblast, Pluripotent] |
| SRP186642 |
| Genome-wide methyl-cytosine competition by DNMT and TET [ESC, EpiSCs, In Vitro Derived Motor Neurons] |
| SRP041828 |
| Comparison of nucleosome occupancy and chromatin states between normal and cancer cell lines [HMEC, MCF7, PC3, PrEC] |
| SRP041822 |
| Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels [Bisulfite-Seq] [Lymphoblastoid Cell Line] |
| SRP186275 |
| Bisulfite-seq profiling of the human neutrophil genome during PMA- and E. coli encounter-induced activation [Blood] |
| SRP186015 |
| Study of DNA methylation pattern in single basepair resolution in the human dopaminergic neurons [LUHMES-derived neurons] |
| SRP185639 |
| DNMT3B has oncogenic activity but evidence suggests that it does not promote CIMP nor cooperate with activated BRAFV600E in human intestinal cancer. (WGBS) [Fetal Lung Fibroblasts] |
| SRP041720 |
| Genome-wide profiling of the DNA methylation landscape at base-pair resolution in human neurological disorders (Bisulfite-Seq) [brain Grey matter] |
| SRP041718 |
| Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome [Primary] |
| SRP125992 |
| Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors [Fetal-Derived Neural Progenitor Cells (Sai)] |
| SRP175163 |
| Loss of hydroxymethylcytosine is an independent adverse prognostic factor in clear cell Renal Cell Carcinoma (ccRCC) and can be abrogated by ascorbic acid mediated TET activation [786-O] |
| SRP174219 |
| Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer [Bisulfite-Seq] [Breast] |
| SRP041025 |
| WGBS data of pediatric B-cell acute leukemias [Bone Marrow / Peripheral Blood] |
| SRP170543 |
| Impaired DNA methylation in oocytes with a mutation in KHDC3L causing recurrent hydatidiform mole [embryo day 6] |
| SRP168427 |
| Tet inactivation disrupts YY1 binding and long-range chromatin interactions to cause developmental defects in embryonic heart [Embryonic Heart] |
| SRP167041 |
| Homo sapiens Epigenomics [Breast, Plasma] |
| SRP163251 |
| Rates of acquisition of de novo mutations in human pluripotent stem cells under different culture conditions [PSC] |
| SRP162996 |
| Very long intergenic non-coding RNA transcripts and expression profiles are associated to specific childhood acute lymphoblastic leukemia subtypes [CD10+ CD19+ Cord blood, Pre-B t(12 21) [ETV6-RUNX1] acute lymphoblastic leukemia] |
| SRP038103 |
| Genome-wide methylation maps for untreated and Aza treated AML3 cells [AML3] |
| SRP037971 |
| Genome wide profiling of MBD2 binding [MCF-7 WT] |
| SRP161783 |
| Whole Genome Bisulfite Sequencing of Rett Syndrome and Control Human BA9 Cortex [Brain] |
| SRP161745 |
| Human retinal pigment epithelium [Cultured Retinal Pigment Epithelum, Eye] |
| SRP158940 |
| N6-methyladenine DNA Modification in Glioblastoma [ChIP-seq, BiSulfite-seq, DIP-seq] [Blast] |
| SRP158895 |
| Comparison of methylome data obtained with rPBAT and tPBAT. [Lung] |
| SRP158894 |
| Optimization of the input amount of library for whole-genome bisulfite sequencing on HiSeq X Ten [Lung] |
| SRP158409 |
| H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes [C3H embryo-derived mesenchymal progenitor, C57BL/6 x 129S4/SvJae F1 embryo-derived ESCs, Patient-derived head and neck squamous cell carcinoma cell line] |
| SRP158279 |
| Epigenetic reprogramming at estrogen-receptor binding sites alters the 3D chromatin landscape in endocrine resistant breast cancer [WGBS] [Breast Cancer] |
| SRP156136 |
| MethMotif: An integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles [Colon, Spleen] |
| SRP035642 |
| The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts [Whole genome bisulfite sequencing] [Blast] |
| SRP155006 |
| Epigenomic signatures in liver and blood of Wilson disease patients include hypermethylation of liver-specific enhancers [Blood, Liver] |
| SRP151496 |
| Generation of FOXO3 engineered human stem cells with enhanced efficacy and safety [ECs, MSCs, TransMSCs, VSMCs] |
| SRP136499 |
| A genomic study of the contribution of DNA methylation to regulatory evolution in primates [Heart, Heart (Later Reclassified As Liver), Kidney, Liver, Lung] |
| SRP148683 |
| Comparison of transcriptome profiles of human embryo cultured in either closed or standard incubator [Preimplantation Embryo] |
| SRP126139 |
| G-quadruplex structures moulds the DNA methylome [Cell Line] |
| SRP144312 |
| Widespread transposable element-driven oncogene expression in cancers [Lung Cancer Cell Line] |
| SRP144098 |
| DNMT3B maintains mCA landscape and regulates mCG status of bivalent promoters in human embryonic stem cells [ESC] |
| SRP117084 |
| Transcription elongation regulates genome 3D structure [monocyte derived macrophages (MDM)] |
| SRP033504 |
| Epigenome analysis of human epidermal samples with aging and sun exposure [Dermis] |
| SRP033491 |
| China_type_2_diebetes_family |
| SRP033283 |
| The RON receptor tyrosine kinase promotes metastasis by triggering epigenetic reprogramming through the thymine glycosylase MBD4 (Bisulfite-Seq) [Breast Cancer Cell Line] |
| SRP033252 |
| Genome-wide profiling of the functional DNA methylation landscape at base-pair resolution in human cancer types [BS-seq] [Blood (B-cells), Brain, Brain (grey matter), Brain (white matter), Breast, Colon, Liver, Lung, Placenta, Prostate] |
| SRP033201 |
| Homo sapiens Genome sequencing |
| SRP133999 |
| Developmental origins define epigenomic differences between subcutaneous and visceral adipocytes [Bisulfite-Seq] [Blood, Subcutaneous Adipose, Visceral Adipose] |
| SRP133941 |
| Longitudinal Personal DNA Methylome Dynamics in a Human with a Chronic Condition [PBMC] |
| SRP133910 |
| Homo sapiens Raw sequence reads [Blood] |
| SRP032354 |
| whole-genome bisulfite sequencing (BS-seq) of HEK293 cells (HEK293-CT) and HEK293 cells stably over-expressing the BAHD1 gene (HEK-BAHD1) [Embryonic Semi-Differentiated Kidley, modified HEK293 cell overexpressing BAHD1] |
| SRP132785 |
| Active BRAF-V600E is the key player in generation of a sessile serrated polyp-specific DNA methylation profile (WGBS data set) [Blood, Colon] |
| SRP132292 |
| Genetic determinants and epigenetic effects of pioneer factor binding [WGBS] [immortalized BJ foreskin fibroblast cell line] |
| SRP131900 |
| Lymphocyte-specific chromatin accessibility pre-determines glucocorticoid resistance in acute lymphoblastic leukemia [WGBS] [ALL xenograft cells] |
| SRP131790 |
| Whole Genome Bisulfite Sequencing of Autism and Control Human BA9 Cortex [Dorsal Lateral Prefrontal Cortex] |
| SRP131112 |
| Endurance training remodels sperm-borne small RNA expression and methylation at neurological gene hotspots [RRBS] [Motile Semen] |
| SRP131087 |
| An epigenomic approach to identifying differential overlapping and cis-acting lncRNAs in cisplatin-resistant cancer cells [BiSulfite-seq] [Lung, Ovarian] |
| SRP130992 |
| Genome-wide Methylation in Cordblood CD4+ Cells from Newborns Exposed vs. Unexposed to Maternal Tobacco Smoke During Pregnancy [Cord blood CD4+] |
| SRP130768 |
| Homo sapiens bisulfite and mRNA sequencing of blood T cells and LCM collected lung cells [Blood, Lung] |
| SRP128919 |
| DNA methylation in hESC derived brain organoids and iPSC derived neurons, astrocytes and neural progenitors [Whole Organoid] |
| SRP127667 |
| Epigenetic marks and nuclear transcriptomes of cardiac myocytes [Heart Left Ventricle] |
| SRP127273 |
| Scalable and efficient single-cell DNA methylation sequencing by combinatorial indexing. [Embryonic Kidney Blood Skin] |
| SRP126972 |
| Distinct Epigenetic Subtypes Are Linked to Disease Progression in Low-Risk MDS [Peripheral blood (PB)] |
| SRP126677 |
| Genome-wide profiling at single-nucleotide resolution of brain cell types in schizophrenia [WGBS] [Brain] |
| SRP029519 |
| Induction of sarcomas by mutant IDH2 [10T isogenic cell line with IDH2 mutation] |
| SRP125973 |
| A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs [Cervical Cancer Cell Line] |
| SRP125826 |
| Intervals of unmethylated DNA spatially co-segregate in cis and in trans [WGBS] [Erythroid Progenitor Cells] |
| SRP028600 |
| Charting a dynamic DNA methylation landscape of the human genome [Cell Line, Cortex, Normal, Primary Tumor, Tumor Tissue] |
| SRP028577 |
| Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization [Bisulfite-seq] [Activated B-cells, Activated B-cells day 16, Activated B-cells week 3, EBV transformed B-cells, EBV transformed B-cells 16 days post infection, EBV transformed B-cells 3 weeks post infection, Resting B-cells] |
| SRP113417 |
| Chromatin and Transcriptional Dynamics in Adult Germline Stem Cells and Mammalian Spermatogenesis [Spermatogonia (Thy1+), Testis] |
| SRP119706 |
| DNA hypermethylation encroachment at CpG island borders in cancer is predisposed by H3K4 monomethylation [WGBS_Hs] [Adjacent Benign Normal Prostate, Prostate Tumor] |
| SRP678403 |
| Homo sapiens Genome sequencing and assembly [Brain, Dermis, Epidermis, Heart, Kidney, Lung, Muscle] |
| SRP026604 |
| Genome-wide methylation maps for Proliferating and Senescent cells [IMR90] |
| SRP117159 |
| Homo sapiens cultivar:PLC/PRF/5 Raw sequence reads [Liver] |
| SRP074598 |
| Single Cell DNA Methylome Sequencing of Human Preimplantation Embryos [Heart, ICM, Sperm, TE, Villus] |
| SRP116948 |
| Whole genome bisulphite sequencing using the Illumina X system [Bisulfite-Seq] [EBV-transformed lymphoblastoid cell line, Fetal Lung Fibroblast] |
| SRP124518 |
| UBE3A-mediated regulation of imprinted genes and epigenome-wide marks in human neurons [Neuronal Cell Line, chromosome duplication model of Dup15q syndrome] |
| SRP645487 |
| Embryonic stem cell factors DPPA2/4 amplify active H3K4me3-H2AK119ub chromatin domains in non-small cell lung cancer (BS-seq) [Lung Cancer, Ovarian Cancer] |
| SRP643149 |
| WGBS data from a DNA dilution series (K562 in NA12878 background) with pUC19 and Lambda spike-in controls. |
| SRP641668 |
| Non-classical epigenome rewiring and its genetic determinants as a cause of cellular senescence and aging-related diseases [Umbilical Vein Endothelium] |
| SRP636882 |
| Chamber-Specific Chromatin Architecture Guides Functional Interpretation of Disease-Associated Cis-Regulatory Elements in Human Cardiomyocytes [Heart Left Atria] |
| SRP115074 |
| Lack of Repressive Capacity of Human Promoter DNA Methylation identified through Genome-Wide Epigenomic Manipulation [Brest Cancer Cell Line] |
| SRP026048 |
| Global epigenomic reconfiguration during mammalian brain development [Brain (Cerebral Cortex), Brain (Dorsal Prefrontal Cortex), Brain (Frontal Cortex), Brain (Middle Frontal Gyrus), ESC] |
| SRP616697 |
| Integrated epigenetic and genetic programming of primary human T cells [WGBS] [Bulk T cells] |
| SRP610863 |
| Generating Revitalized Stem Cell-Engineered CAR-NKT Cells for the Treatment of Malignant Pleural Mesothelioma [HSPC-cell, PBMC15MCAR-NKT] |
| SRP596512 |
| Disordered DNA methylation leads to targetable transcriptional plasticity in ATRT [WGBS cell line] [Cell Line] |
| SRP596170 |
| Chemical reprogramming of human blood cells into hCiPS cells [ADSC derived hCiPSC, EPC derived hCiPSC] |
| SRP593822 |
| Memory-like T cells emerge early in circulation after gene therapy for SCID-X1 [Bisulfite-Seq] [Blood] |
| SRP518400 |
| Enriched Methylome [Bone Marrow] |
| SRP588774 |
| Three Dimensional Matrigel Endows Human Formative Pluripotent Stem Cells with Pre-gastrula Stage Epiblast Features [WGBS] |
| SRP580181 |
| Dynamic Multi-omics Profiling Unveils Bimodal Epigenetic Roles of Chromatin O-GlcNAc modification in Premature Senescence Program [BiSulfite-seq] [Primary Fibroblasts] |
| SRP107883 |
| Archaic and modern bone DNA methylation maps from the Neanderthal, Denisovan, modern human and chimpanzee [Bone] |
| SRP107857 |
| TRIM28-Regulated Transposon Repression Is Required for Human Germline Competency and Not Primed or Naive Human Pluripotency [naive ESC, primed ESC] |
| SRP577515 |
| DNA methylation changes in Tatton-Brown-Rahman Syndrome models of neuronal development [D-IN, V-IN, V-Npc, iGlut] |
| SRP576746 |
| CD19-CAR T cells undergo exhaustion epigenetic programming in patients with acute lymphoblastic leukemia [CD8+ T Cells] |
| SRP574020 |
| Silencing TET1 expression alters the epigenomic landscape and amplifies transcriptomic responses to allergen in airway epithelial cells [Bronchial Epithelial] |
| SRP571369 |
| Genome-wide DNA methylation profiling of human CD4+ T helper cells define epigenetic signatures for Th1, Th17 and non-classic Th1 cells [Blood, Culture] |
| SRP106910 |
| Human memory CD8 T-cell effector-potential is epigenetically preserved during in vivo homeostasis [HuTCM, HuTEM, HuTN, HuTSCM, TCMD204, TEMD203, TND201, TSD202] |
| SRP568118 |
| High-Fidelity, Efficient Human Post-Implantation Embryo Models Generated by STAT3-Induced Cell Plasticity [WGBS] [Pluripotent Stem Cell] |
| SRP022182 |
| Homo sapiens Epigenomics |
| SRP022160 |
| Whole-genome analysis of 5-hydroxymethylcytosines and 5-methylcytosines at base resolution in human brain [Brain Prefrontal Cortex] |
| SRP022149 |
| Genome-wide parent-of-origin DNA methylation analysis [Methyl-seq] [Normal Brain, Normal Liver, Normal Placenta] |
| SRP104789 |
| Culture of Human embryonic stem cells in different media [ESC] |
| SRP104305 |
| 5hmC dynamically correlated with enhancer''s activities during hES-to-Pancreatic endoderm cell differentiation (Bisulfite-Seq) [ESC] |
| SRP559414 |
| The myoblast methylome: Multiple types of associations with chromatin and transcription [Skeletal Muscle] |
| SRP104141 |
| NicE-seq: high resolution open chromatin profiling [Colorectal] |
| SRP103943 |
| DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A [WGBS] [epithelial HEK 293T cells] |
| SRP103839 |
| Single-cell Multi-omics Sequencing and Analyses of Human Colorectal Cancer [CRC, HeLa contaminant] |
| SRP022041 |
| Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies [Bisulfite-Seq] [Buccal] |
| SRP103794 |
| Methylation DNA mediated KLF4 binding activity in glioblastoma cells [Brain] |
| SRP555335 |
| Genome-wide methylation sequencing data (WGBS) from 10 urothelial carcinoma and matched normal tissues [Bladder] |
| SRP021846 |
| Age-related methylation changes are associated with altered transcriptional circuitry [Methyl-seq] [Skin (Epidermal Suction Blister Samples)] |
| SRP021479 |
| Genome-wide DNA methylation aberrations in human atherosclerosis (sequencing) [Carotid] |
| SRP103077 |
| Mapping DNA methylation and CTCF/cohesin occupancy on nascent chromatin and DNMT-targeted nascent chromatin [ESC] |
| SRP551562 |
| DNA Methylation Profiling at Base-Pair Resolution Reveals Unique Epigenetic Features of Early-Onset Colorectal Cancer in Underrepresented Populations [Moderately Differentiated Rectal Adenocarcinoma, Moderately Differentiated Rectosigmoid Adenocarcinoma, Moderately Differentiated Sigmoid Colon Cancer, Normal Adjacent Colonic Mucosal, Normal Adjacent Rectal, Normal Adjacent Rectosigmoid, Normal Adjacent Sigmoid, Rectal Adenocarcinoma Arising From Tubulovillous Adenoma With High Grade Dysplasia] |
| SRP551395 |
| Clonorchis sinensis infection alters the methylation and hydroxymethylation of hepatocellular carcinoma [HCC adjacent, HCC tumor] |
| SRP102997 |
| Genome-wide nucleosome occupancy and DNA methylation profiling in endometriosis cells [hTERT immortalized endometriosis] |
| SRP543819 |
| Seminal Plasma cell-free DNA [Seminal Plasma] |
| SRP541825 |
| Intragenic Epigenetic Deregulation by IDH2 Mutations Synergizes with SRSF2 Mutations Causing Mis-splicing of Key Transcriptional Regulators [BiSulfite-seq] [Blood, Marrow] |
| SRP101887 |
| Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability [Bisulfite-Seq] [anterior cingulate cortex (BA24), hippocampus (HC), nucleus accumbens (NAcc), prefrontal cortex (BA9)] |
| SRP536371 |
| DNA methylation protects cancer cells against non-canonical senescence [Colon] |
| SRP338680 |
| Molecular profile of HepG2 cell line (IBMC) [Liver] |
| SRP533334 |
| Methylation patterns of the nasal epigenome of hospitalized SARS-CoV-2 positive patients reveal insights into molecular mechanisms of COVID-19 [Nasopharyngeal Swab] |
| SRP531388 |
| Inferring DNA methylation in non-skeletal tissues of ancient specimens [Bone (Femur)] |
| SRP528679 |
| The Recombinase RAD51 Plays Critical Roles in the Maintenance Methylation of Genomic DNA by Promoting DNMT1 Stability and Recruitment [HCT116] |
| SRP527234 |
| Induction of meiosis from human pluripotent stem cells [Bisulfite-seq] [day10, day15, day2, day5, hiPSC] |
| SRP526881 |
| Total plasma cfDNA methylation in kidney transplant recipients provides insight into acute allograft rejection pathophysiology [Plasma] |
| SRP526064 |
| Valine-restricted diet regulates DNA methylation [Bisulfite-Seq] [HCT116] |
| SRP100067 |
| Epigenome-wide analysis of DNA methylation in lung tissue shows concordance with blood studies and identifies tobacco smoke-inducible enhancers [purified primary alveolar epithelial type 2] |
| SRP525370 |
| Bulk whole genome bisulfite sequencing from benign human Fallopian tube [Fallopian Tube] |
| SRP525209 |
| Methylation changes induced by alpha-hemolysin from Staphylococcus aureus in human primary Th1 lymphocytes [Lymphocyte] |
| SRP099603 |
| Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the methylome [Postmortem Brain] |
| SRP523753 |
| Vitamin C promotes epidermal proliferation by enhancing the DNA demethylation of proliferation-related genes in human epidermal equivalents (WGBS) [Epidermal Equivalent] |
| SRP523710 |
| Rapid Human Oogonia-like Cell Specification via Combinatorial Transcription Factor-Directed Differentiation [BiSulfite-seq] [DDX4+ induced oogonia-like, DDX4+ induced oogonia-like cells (no DNMT1i), DDX4+ induced oogonia-like cells naive reset, PGCLC, hiPSC naivereset, hiPSC primed] |
| SRP521389 |
| Bisulfite-Free Whole-Genome Mapping of 5-Methylcytosine at Single-Base Resolution by TAD-seq [Cell Line] |
| SRP521100 |
| Continuous turnover and asynchronous aging of human memory T cells across tissues [Jejunum, Lung, Mesenteric Lymph Node, Spleen] |
| SRP098648 |
| Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA [BiSulfite-seq] [Adult Brain Frontal Lobe, LNCaP clone] |
| SRP519334 |
| sciMETv3 Single-cell DNA Methylation Raw Sequence Reads [BA46] |
| SRP097759 |
| S-adenosylhomocysteine hydrolase participates in DNA methylation inheritance [Kidney] |
| SRP516302 |
| Modulating immune cell fate and inflammation through CRISPR-mediated DNA methylation editing [WGBS-seq] [B-ALL cell line] |
| SRP510797 |
| Homo sapiens Raw sequence reads [Kidney] |
| SRP515825 |
| Mitochondria-localized MBD2c facilitates mtDNA transcription and drug resistance [Bisulfite-Seq] [MDA-MB-468] |
| SRP515320 |
| Epigenetic dysregulation of transposable elements in cognitive impairment and Alzheimer's disease [Isolated WBC] |
| SRP478956 |
| Divergent originations of parental DNA hydroxymethylation in human preimplantation embryos [ESC] |
| SRP514328 |
| DNA 5-methylcytosine regulates genome-wide formation of G-quadruplex structures [WGBS] [Embryonic Kidney] |
| SRP019232 |
| Whole genome bisulfite-seq of two healthy males. [Hair Follicle, Peripheral Blood Lymphocyte] |
| SRP001371 |
| University of Washington Human Reference Epigenome Mapping Project [Fetal Intestine Large, Fetal Intestine Small] |
| SRP511776 |
| Patient TSC2 Mutant Cells Exhibit Aberrations in Early Neurodevelopment Accompanied by Changes in the DNA Methylome (Bisulfite-Seq) [iPSC-derived neural progenitor, induced pluripotent stem cells (iPSC)] |
| SRP511377 |
| Bisulfite seq of UHRF1 KO A549 cells [Tumor] |
| SRP510877 |
| High-Resolution Molecular Profiling of Epileptic Brain Activity via Explanted Depth Electrodes [Methylation] [Brain] |
| SRP510686 |
| A comparison of methylome data produced with tPBAT and sPBAT library preparation protocols. [IMR-90 (JCRB9054)] |
| SRP510440 |
| Tracking and mitigating imprint erasure during induction of naïve human pluripotency at single-cell resolution [Bisulfite-Seq] [ESC] |
| SRP096028 |
| Dental Pulp Stem Cells Model Early Life and Imprinted DNA Methylation Patterns. [Dental Pulp Stem Cell, Luhmes] |
| SRP508090 |
| Epigenomic landscape of human cumulus cells in premature ovarian insufficiency using single-base resolution methylome and hydroxymethylome. [scWGBS_seq] [Ovary] |
| SRP504847 |
| Ectopic expression of DNMT3L in human trophoblast stem cells restores features of the placental methylome [PBAT BS-Seq] [Trophoblast Stem Cell] |
| SRP504674 |
| Generation of human spermatogonia from pluripotent stem cells [PGCLC, xrTestis] |
| SRP504106 |
| Mutant IDH1 inhibition induces reverse transcriptase and dsDNA sensing to activate tumor immunity [human WGBS] [Cholangiocarcinoma] |
| SRP503688 |
| Genome-wide DNA methylation seq data and RNA seq data in three paired HCC and normal tissue samples [HCC, Paracancerous] |
| SRP501436 |
| Transcriptomic and epigenomic consequences of heterozygous loss-of-function mutations in AKAP11, a shared risk gene for bipolar disorder and schizophrenia [WGBS] [iPSCs were derived from lymphoblasts] |
| SRP500704 |
| Bisulfite-Free Whole-Genome Mapping of 5-Methylcytosine at Single-Base Resolution by NTD-seq [Cell Line] |
| SRP095006 |
| Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA Methylation by dCas9 methyltransferases (CRISPRme) [WGBS] [Embryonic Kidney Cell Line] |
| SRP094960 |
| Genomic profiling of human spermatogonial stem cells [WGBS] [Testis] |
| SRP499337 |
| Repetitive element transcript accumulation is related to inflammaging in humans [PBMC] |
| SRP498758 |
| Molecular mechanisms of Target organ damage in youth with primary hypertension [bisulfite-Seq] [Blood] |
| SRP094721 |
| Epigenomic landscapes of hESC-derived neural rosettes [Neural Stem Cell] |
| SRP496763 |
| Charting the regulatory landscape of TP53 on transposable elements in cancer [WGBS] [A549, HCT116, RKO] |
| SRP094554 |
| A Molecular signature for Delayed Graft Function [BS-Seq] [Kidney] |
| SRP434804 |
| MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons [WGBS] [Neuron] |
| SRP494617 |
| methylGrapher: Genome-Graph-Based Processing of DNA Methylation Data from Whole Genome Bisulfite Sequencing [1000 Genomes LCL] |
| SRP494242 |
| Methylation changes induced by alpha-hemolysin from Staphylococcus aureus in human primary Th17 lymphocytes. [Lymphocyte] |
| SRP491820 |
| Cell-free DNA Methylation Patterns in Aging and Their Association with Inflamm-aging [Plasma] |
| SRP093764 |
| Epigenetic resetting of human pluripotency [ESC] |
| SRP490212 |
| UHRF1 ubiquitin ligase activity supports the maintenance of low-density CpG methylation [BiSulfite-seq] [Colorectal Carcinoma epithelial] |
| SRP490076 |
| Persistent epigenome anomalies in induced pluripotent stem cells from late-onset sporadic Alzheimer's disease cases [BiSulfite-seq] [iPSC] |
| SRP093254 |
| Whole Genome Bisulfite Sequencing of HUES8 WT and HUES8 TET1/2/3 TKO hESCs [ESC] |
| SRP485412 |
| PRC2-AgeIndex: a universal biomarker of aging and rejuvenation [WGBS] [Dermal Fibroblasts, Foreskin Fibroblasts] |
| SRP092462 |
| HUES8 TET1/2/3 TKO hESCs [ESC] |
| SRP480822 |
| Novel culture systems for naive human embryonic stem cells based on chemical molecule screening [WGBS] [Naive State, Primed State] |
| SRP479947 |
| DNMT1-Dependent PLPP3: A Novel Regulator of Ovarian Aging Through Inhibition of Oxidative Stress-Related Protein Translation [Ovary] |
| SRP479666 |
| Simultaneous Targeting of Ovarian Cancer and Its Microenvironment Using Stem Cell-Engineered Off-The-Shelf CAR-NKT Cells [MNKT, MT] |
| SRP479538 |
| H3K36me3-coupled DNA Demethylation by DNMT3A Is Essential for Hypoxia-Induced EMT of Cancer Cells [Bisulfite Sequencing] [Colon] |
| SRP478896 |
| SMCHD1 controls the structure and accessibility of heterochromatin and functions as an organizer of genome compartments [Pectoralis Major Muscle] |
| SRP476462 |
| Epigenetic enigma: reinstating normalcy at a naïve chromosomal locus by suppressing an oncogenic lncRNA transgene [Bisulfite-Seq] [Colon Origin] |
| SRP473783 |
| scNanoSeq-CUT&Tag: a long-read single-cell CUT&Tag sequencing method for efficient chromatin modification profiling within individual cells [Blood] |
| SRP092113 |
| Splinted Ligation Adapter Tagging, a novel library preparation for whole genome bisulphite sequencing [ALL cell line, Lymphoblastoid Cell Line] |
| SRP474233 |
| Identification of differentially expressed tumour-related genes regulated by UHRF1 regulated DNA methylation [WGBS] [Mammary Gland] |
| SRP471363 |
| KOREF Multiome Reference [Blood] |
| SRP470181 |
| Hypermethylation of DNA impairs megakaryogenesis in delayed platelet recovery after allogeneic hematopoietic stem cell transplantation [Bone Marrow] |
| SRP467808 |
| IN-vitro HTM sequencing Raw sequence reads [HTM, Tissue] |
| SRP467414 |
| DNA methylation profiling identifies TBKBP1 as potent amplifier of cytotoxic activity in CMV-specific human CD8+ T cells [Blood] |
| SRP464400 |
| Epigenetic signature of human vitamin D3 and IL-10-conditioned regulatory DCs [Leukapheresis Products] |
| SRP464289 |
| DNMT3B PWWP mutations cause hypermethylation of heterochromatin (WGBS) [Colorectal Cancer Cell Line] |
| SRP462543 |
| iPSC-based modeling of preeclampsia identifies defects in extravillous trophoblast differentiation [Mesenchymal Stem Cell, Placenta, iPSC derived extravillous trophoblast, iPSC derived trophoblast stem cell, iPSC reprogrammed from renal epithelial, iSPC reprogrammed from mesenchymal stem cell] |
| SRP462521 |
| A role of p53 in mediating epigenetic stress (WGBS) [Kidney Epithelial] |
| SRP461724 |
| Endogenous retrovirus LTR12C hold potential locus-dependent activities as promoter and/or enhancer [BiSulfite-seq] [Embryonic Kidney] |
| SRP461642 |
| Whole genome bisulfite sequencing identifies stage- and subtype-specific DNA methylation signatures in pancreatic cancer [Normal Pancreatic Ductal Mouse Organoid, Normal Pancreatic Ductal Patient-Derived Organoid, PanIN mouse organoid, Pancreatic Ductal Adenocarcinoma Mouse Organoid, Pancreatic Ductal Adenocarcinoma Patient-Derived Organoid] |
| SRP090105 |
| The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis [WGBS_Hs] [Retina] |
| SRP089722 |
| Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling [WGBS] [primary prostate epithelial cells (PrEC), prostate cancer cell line (LNCaP)] |
| SRP456983 |
| The role of HELLS in human induced pluripotent stem cells [Cell Line] |
| SRP456514 |
| A modular dCas9-based recruitment platform for combinatorial epigenome editing [Embyonic Kidney] |
| SRP454277 |
| Characterisation and reproducibility of the HumanMethylationEPIC v2.0 BeadChip for DNA methylation profiling [WGBS] [Prostate Tumour] |
| SRP453184 |
| Viral reprogramming of host transcription initiation [B Cell Lymphoma] |
| SRP452335 |
| Epigenetic sequencing of allogeneic HSC-derived CAR-engineered NKT cells [BCAR-iNKT, BCAR-iNKT-IL15, Bcar-T] |
| SRP451599 |
| The effect of Histone H3.3 knockdown on DNA methylation in HepG2 cells [Hepatoma] |
| SRP450683 |
| Epigenomic landscape of colorectal adenoma and cancer [Colorectal] |
| SRP450395 |
| Epigenetic therapy targets the 3D epigenome in endocrine-resistant breast cancer [WGBS] [Breast cancer PDX model Gar15-13, Breast cancer PDX model HCI005] |
| SRP446321 |
| Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells [Colon] |
| SRP445661 |
| Whole-genome bisulfite sequencing (WGBS) was performed for 12 HCC and paired NATs [Liver] |
| SRP386415 |
| SELF-PATTERNING OF HUMAN STEM CELLS INTO POST-IMPLANTATION LINEAGES [Cell Line] |
| SRP441209 |
| Omics analyses of stromal cells from ACM patients reveal alterations in chromatin organization and mitochondrial homeostasis [Bisulfite-Seq] [Cardiac Mesenchymal Stromal] |
| SRP441171 |
| Single-stranded Premethylated 5mC Adapters Uncovers the Methylation Profile of Plasma Ultrashort Single-Stranded Cell-Free DNA [Plasma] |
| SRP440514 |
| TNRC18 recognizes H3K9me3 to mediate transposable elements silencing at ERV regions [WGBS] [Embryonic Kidney] |
| SRP439675 |
| NPC268 whole-genome bisulfite sequencing (WGBS) [Nasopharyngeal Carcinoma] |
| SRP341621 |
| LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA [Plasma Separated From Blood] |
| SRP436137 |
| Malignant Transformation Drives DNA Methylation Loss and Transcriptional Activation of Transposable Element Loci [WGBS] [Neonatal Foreskin] |
| SRP082156 |
| Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype [WGBS] [Prostate] |
| SRP080893 |
| Active and senescent human hematopoietic stem and progenitor cell whole genome bisulfite sequencing [DNA] |
| SRP432935 |
| Epigenetic modification sequencing data of human U2OS cells [Tibia] |
| SRP080340 |
| Evidence That Three Classes of Methylomes Specific for Stem, Somatic and Transformed Cells Are Set by Three Independent Mechanisms (Methyl-Seq) [Blast] |
| SRP430982 |
| Whole genome bisulfite sequencing data of blood cfDNA form 29 CRC and 9 Non-CRC patients. [Blood] |
| SRP426633 |
| DNA methylation alterations in prostate cancer patient derived xenograft models revealed by whole genome bisulfite sequencing [Patient Derived Xenograft] |
| SRP426514 |
| Epigenetic therapy activates TE-chimeric transcripts to provide additional source of antigens in glioblastoma stem cells [Brain, Skin] |
| SRP424257 |
| Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [1] [Glioblastoma Tumor] |
| SRP423445 |
| Ultrafast Bisulfite Sequencing for Efficient and Accurate 5-Methylcytosine Detection in DNA and RNA [ESC, Plasma, Stem Cell] |
| SRP420728 |
| 5-hydroxymethylcytosines regulate gene expression as a passive DNA demethylation resisting epigenetic mark in proliferative somatic cells [methylation] [HEK293T] |
| SRP373598 |
| GM12878 MultiOmics [Blood] |
| SRP241842 |
| REH MultiOmics [B Cell Precursor Leukemia] |
| SRP415835 |
| Comprehensive sequence-based DNA methylation analysis suggests that PanIN lesions are acinar-derived and epigenetically primed for carcinogenesis [Pancreas] |
| SRP404930 |
| LN-stem, tumor stem, tumor terminally differentiated CD8 T cells from human kidney cancer [LN, PBMC, Spleen, TDLN, Tumor] |
| SRP076893 |
| “Same Difference”: Comprehensive evaluation of four DNA methylation measurement platforms [Lung Fibroblast] |
| SRP015742 |
| GSE40832: Whole Genome Bisulfite Sequencing by ENCODE/HAIB [ESC, Normal] |
| SRP015704 |
| Genome-wide mapping of nucleosome positioning and DNA methylation within Individual DNA molecules [Glioblastoma, Lung Fiboblast Cells] |
| SRP409096 |
| Epigenetic dynamics during capacitation of naïve human pluripotent stem cells [PBAT] [chemically reset hPSC, conventional hPSC, embryo-derived naive hPSC] |
| SRP408041 |
| The catalytic activity of TET1 is required for human germ cell fate choice [Bisulfite-Seq] [ESC, PGCLC] |
| SRP405928 |
| Optimized bisulfite sequencing reveals the lack of 5-methylcytosine in mammalian mitochondrial DNA [WGBS] [Brain, Breast Cancer, ESC, Embryonic Kidney, Hepatocarcinoma, Lung Adenocarcinoma, Melanoma, Neuroblastoma, Platelet] |
| SRP405874 |
| Rebalancing TGFß1/BMP Signals Preserves Effector and Memory Programs in Terminally Dysfunctional CD8+ T Cells [Bisulfite-Seq] [Cord Blood] |
| SRP075910 |
| Global delay in nascent strand DNA methylation [Cell Line, ESC] |
| SRP075876 |
| Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain [Brain, ESC] |
| SRP357194 |
| HPV integration generates cellular super enhancer and functions as ecDNA to regulate genome-wide transcription [C33A, CaSki, HeLa, S12, SiHa] |
| SRP075562 |
| ZBTB33 (Kaiso) Differentially Regulates Cell Cycle Through cyclin D1 and cyclin E1 in a Cell Specific Manner [BiSulfite-seq] [HeLa] |
| SRP012412 |
| GSE59395: Genome-wide map of regulatory interactions in the human genome [Adrenal Gland, Body Of Pancreas, Bone Marrow, Cell Line, Esophagus Muscularis Mucosa, Esophagus Squamous Epithelium, Fibroblast Of Arm, Gastroesophageal Sphincter, Heart Left Ventricle, Hepatocellular Carcinoma, Hepatocyte, Lower Leg Skin, Mammary Epithelial, Motor Neuron, Ovary, Prostate Gland, Right Lobe Of Liver, Smooth Muscle, Spleen, Stomach, Suprapubic Skin, Testis, Thyroid Gland, Tibial Nerve, Transverse Colon, Upper Lobe Of Left Lung] |
| SRP014898 |
| Human Sperm Epigenomes and Transcriptomes Reveal Novel Features of Enhancers, Sex Chromosomes, piRNAs, Gametogenesis, and Inherited Small RNAs (Bisulfite-Seq) [Sperm] |
| SRP400466 |
| Multiplex Epigenome Editing of MECP2 to Rescue Rett Syndrome Neurons (WGBS) [ESC] |
| SRP075292 |
| Cumulative Impact of Polychlorinated Biphenyl and Large Chromosomal Duplications on DNA Methylation, Chromatin, and Expression of Autism Candidate Genes. [Brain, Neuroblastoma Cell Line, neuroblastoma cell line with extra copy of part of maternal chr15, neuroblastoma cell line with extra copy of part of maternal chr15 and part of chr22] |
| SRP396513 |
| Rockfish: Detection of 5mC DNA Modifications Using Raw Nanopore Signal [ESC, Purified Cardiomyocyte] |
| SRP398111 |
| to be updated [Blood] |
| SRP336573 |
| Perturbation of TET2 condensation induces genome-wide promiscuous DNA hypomethylation and curtails leukemia cell growth [ESCs (mESCs), Leukemia Cell Line] |
| SRP397737 |
| Global hypermethylation of intestinal epithelial cells is a hallmark feature of neonatal surgical necrotizing enterocolitis [lcm_colon_ileum] [Colon, Ileum] |
| SRP397676 |
| Loss of tight junctions disrupts gastrulation patterning and increases differentiation towards the germ cell lineage in human pluripotent stem cells [Skin Fibroblasts] |
| SRP074852 |
| DNMT and HDAC inhibitors globally induce cryptic TSSs encoded in long terminal repeats [NCI-H1299-EGFP/NEO] |
| SRP396738 |
| Highly efficient and rapid generation of human pluripotent stem cells by chemical reprogramming (WGBS) [Adult Human Adipose Derived Mesenchymal Stromal, Chemically Induced Pluripotent Stem Cell] |
| SRP396408 |
| Neonatal necrotizing enterocolitis-associated DNA methylation signatures in the colon are evident in stool samples of affected individuals [Colon, Stool] |
| SRP396192 |
| DNA Methylation Profile of Lip Tissue from Congenital Non-syndromic Cleft Lip and Palate Patients by Whole Genome Bisulfite Sequencing [Lip] |
| SRP395427 |
| WGBS-seq and oxWGBS-seq Atlas for Oral Squamous Cell Carcinoma [Normal Adjacent, OSCC] |
| SRP012560 |
| GSE34399: Replication Timing by Repli-seq from ENCODE/University of Washington [ESC, Skeletal Muscle Myoblast] |
| SRP074177 |
| Nucleation of DNA Repair Factors by FOXA1 Links DNA Demethylation to Transcriptional Pioneering [MCF-7 cells (siFOXA1-transfected), MCF-7 cells (siNS-transfected)] |
| SRP394454 |
| Methylation profile of latent metastatic (Lat-M) cells from clear cell renal cell carcinoma (ccRCC) [Kidney Cancer] |
| SRP014634 |
| Examination of four human tissue samples by MethylC-seq [Placenta From Full-Term Pregnancy] |
| SRP049651 |
| Large-scale epigenetic reprogramming is punctuated late during the evolution of pancreatic cancer progression [BS-Seq] [Liver Metastasis, Lung Metastasis, Normal Pancreas, Patient A38, Peritoneal Metastasis, Primary Tumor] |
| SRP392105 |
| Placental ischemia disrupts DNA methylation patterns of distal regulatory regions in rat [Placenta, Planceta] |
| SRP389118 |
| Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation [WGBS] [Esophageal Adenocarcinoma, Esophageal Squamous Cell Carcinoma] |
| SRP387971 |
| Tonic-signaling chimeric antigen receptors drive human regulatory T cell exhaustion [CD4+ TCONV, CD4+ TREG] |
| SRP072141 |
| stem cell epigenomics [H1 stem cell] |
| SRP072078 |
| epigenomic analysis of lung and liver [Liver, Lung] |
| SRP072075 |
| Epigenomic analysis of lymphocytes and fibroblasts [Foreskin Fibroblasts, sorted CD4+ T cells] |
| SRP072071 |
| study of brain methylation [Brain Pre-Frontal Cortex] |
| SRP071891 |
| Functional Haploid Human Oocytes Generated from Polar Body Genomes (Bisulfite-Seq) [ESC, Polar Body Nuclear Transfer] |
| SRP387319 |
| Dysfunction of 5-methylcytosine oxidases and the Polycomb protein RYBP leads to widespread DNA hypermethylation and cell transformation [WGBS] [Bronchial] |
| SRP387154 |
| Accurate simultaneous sequencing of genetic and epigenetic bases in DNA [Blood] |
| SRP071771 |
| Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tissue-of-origin mapping from plasma DNA [WGBS] [Liver, Skeletal Muscle] |
| SRP386501 |
| Multiplex Epigenome Editing of MECP2 to Rescue Rett Syndrome Neurons [ChIP-BS-Seq] [ESCs (hESC)] |
| SRP304105 |
| Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability [Cell Line] |
| SRP384348 |
| Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation [WGBS-Seq] [Ebryonic Stem Cell, Embryonic Kidney, Ngn2 neurons] |
| SRP013816 |
| SINE transcription by RNA polymerase III is suppressed by histone methylation but not DNA methylation [HeLa cervical carcinoma] |
| SRP377560 |
| Reversible epigenetic alterations mediate PSMA expression heterogeneity in advanced metastatic prostate cancer. [Prostate Cancer Patient Derived Xenograft] |
| SRP376918 |
| Droplet-based bisulfite sequencing for high-throughput profiling of single-cell DNA methylomes [N.A.] |
| SRP068579 |
| Reversion to naïve human pluripotency creates a new methylation landscape devoid of blastocyst or germline memory [5iLAF SSEA4 negative UCLA1 EpiLC day 0, 5iLAF SSEA4 negative UCLA1 EpiLC day 16, 5iLAF SSEA4+ subpopulation UCLA1 hESCs, 5iLAF SSEA4-subpopulation UCLA1 hESCs, 5iLAF SSEA4-subpopulation UCLA20n hESCs, Primed SSEA4+ UCLA1 hESCs, Primed UCLA1 EpiLC day 0, Primed UCLA1 EpiLC day 16] |
| SRP330251 |
| Vitamin B12 regulates the transcriptomes of human ileal epithelial cells (iECs) [Ileum] |
| SRP375137 |
| DNMT3A-mediated DNA demethylation is required for hypoxia induced EMT of human cancer cells |
| SRP373924 |
| NOMe-Seq analysis of IMR-90 cell line II [IMR90] |
| SRP373708 |
| WGBS of primary and recurrent ovarian cancer tumors with and without BRCA1/2 mutations [Ovarian Cancer Tumors] |
| SRP067779 |
| Novel contribution of acetylated histone variant H2A.Z in activation of neo-enhancers in prostate cancer [NOMe-seq] [LNCaP clone FGC (ATCC CRL-1740). Androgen-sensitive human prostate adenocarcinoma, Primary prostate epithelial cells. Cambrex Bio Science Cat. No. CC-2555] |
| SRP323101 |
| RRBS-based quantitative methylation analysis define 100% methylation fidelity CpG sites [Blood, Retina] |
| SRP368308 |
| Lack of major genome-wide DNA methylation changes in succinate-treated human epithelial cells [Bronchial] |
| SRP367891 |
| DNA methylation analysis of malignant and normal uveal melanocytes reveals novel molecular features of uveal melanoma [Primary Culture, UM sorted] |
| SRP085035 |
| Molecular Criteria for Defining the Naive Human Pluripotent State [methylation profiling] [ESC, Naive human ESCs] |
| SRP364929 |
| human rDNA obesity [Blood] |
| SRP012499 |
| Epigenetic alterations of a DNMT3B-mutant ICF patient at base-pair resolution [Blood] |
| SRP362494 |
| The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory (WGBS) [iPSC] |
| SRP000996 |
| BI Human Reference Epigenome Mapping Project [CD184+ endoderm cultured, CD19, CD34 Primary Cells, Cell Line, Fetal Adrenal, Fetal Heart, Fetal Muscle Leg, Fetal Muscle Trunk, Fetal Placenta, Fetal Spinal Cord, Fetal Stomach, Fetal Thymus, IMR90, adult CD14, adult CD3, adult CD56] |
| SRP358957 |
| WGBS of OLD and YOUNG primary Fibroblasts [Arm Skin, Inguinal Area, NS, Umbilical Area] |
| SRP353536 |
| Transcriptome and Bisulfite sequencing of drug treated breast cancer cell lines [Mammary Gland] |
| SRP012161 |
| Evolutionary Significance of DNA Methylation in Human and Chimpanzee Brains [Prefrontal Cortex] |
| SRP357372 |
| WGBS and RNA-seq of HUVECs transfected with siNC or siTET2 [Umbilical Vein Endothelial Cells] |
| SRP357363 |
| Whole-genome bisulfite sequencing anaysis of PSCs [Feeder-free PSC] |
| SRP356708 |
| Young vs Old Fibroblast WGBS [Skin] |
| SRP299802 |
| Acute lymphoblastic leukemia displays a distinct highly methylated genome [Cell Line] |
| SRP353982 |
| methyl-Seq of Pediatric ARDS Nasal and Bronchial Brushings [Bronchial, Nasal] |
| SRP353670 |
| DNA Methylation Potential Energy Landscape Analysis of MLL-rearranged Acute Myeloid Leukemia (AML) and Normal hematopoietic precursors [WGBS] [Primary] |
| SRP353340 |
| NOMe-Seq analysis of IMR-90 cell line [IMR90] |
| SRP353040 |
| WGBS of control and DAC-treated tumor tissue from PDX model [Colorectal Cancer] |
| SRP352189 |
| CRISPR-based targeted haplotype-resolved assembly of a megabase region [WGBS] [B Cell] |
| SRP348645 |
| Transcriptomic and Epigenomic Profiles of CIC-knockout and IDH1 mutant cells [WGBS] [Immortalized Astrocyte Cells] |
| SRP346999 |
| Whole genome bilsufite sequencing of sgTET2 HepG2 [Missing] |
| SRP346828 |
| NOMe-HiC: joint profiling of genetic variants, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule [Lung Fibroblast Cell Line] |
| SRP011945 |
| Base Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome [ESC] |
| SRP011746 |
| Ultra-low-input, tagmentation-based whole genome bisulfite sequencing |
| SRP345048 |
| Antigen cross-presentation in young tumor-bearing hosts promotes CD8 T cell terminal differentiation [WGBS] [Germ Cell Tumor] |
| SRP342964 |
| scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation [Blood] |
| SRP339574 |
| Methylation Mediated Silencing of Protein Kinase C Zeta Induces Apoptosis Avoidance through ATM/Chk-2 Inactivation in Dedifferentiated Chondrosarcoma [Chondrosarcoma Cell Line] |
| SRP338853 |
| DNA methylation of MOLM-13 cells [Cell Line] |
| SRP338189 |
| Deleting DNMT3A in CAR T cells prevents exhaustion and 1 enhances antitumor activity [T Cells] |
| SRP337501 |
| DNA methylation landscape and signature of CD4+ lymphocytes of lamina propria in Crohn's patients by reduced representation and bisulfite sequencing [BiSulfite-seq] [Isolated CD4+] |
| SRP337159 |
| Homo sapiens Epigenomics [Sperm] |
| SRP337018 |
| whole-genome wide DNA methylation aberration in HCC [Liver] |
| SRP334550 |
| Proinflammatory cytokines promote TET2-mediated DNA demethylation during CD8 T cell effector differentiation [CD8+ T Cells] |
| SRP199025 |
| Molecular mechanism of KCNJ5 gene hotspot mutation in adrenal aldosteronoma [Adrenal Gland] |
| SRP332448 |
| H3K9 dimethylation safeguards cancer cells against activation of the Interferon pathway [WGBS] [U937] |
| SRP332277 |
| Methyl-seq Human [Sperm] |
| SRP332046 |
| The WGBS and ATAC-seq from human serum and amniotic cell [Blood] |
| SRP329794 |
| Anchor-Based Bisulfite Sequencing determines genome-wide DNA methylation [Cell Line] |
| SRP328700 |
| Whole genome methylation profiliing between the IMU and KRT subtypes of HPV-associated head and neck cell carcinoma (HNSCC) [Head And Neck Cell Carcinoma] |
| SRP268979 |
| Loss of epigenetic suppression of retrotransposons with oncogenic potential in aging mammary luminal epithelial cells [Mammary Luminal Epithelial] |
| SRP286872 |
| Transient naive reprogramming corrects hiPS cells functionally and epigenetically [WGBS] [Blast, ESC, Keratinocytes, Mesenchymal Stem Cell, iPSC] |
| SRP291325 |
| Transient naive reprogramming corrects hiPS cells functionally and epigenetically [WGBS 2] [Cultured Human Fibroblasts, ESC, Pluripotent Stem Cell, Reprogramming Intermediate, iPSC] |
| SRP325924 |
| Distinct DNA methylation landscape between pediatric brain and adult brain [Cerebellum, Cerebrum] |
| SRP325722 |
| Chemical-based external stimulation reprograms human somatic cells into pluripotency (WGBS) [Adult Human Adipose Derived Mesenchymal Stromal, Chemically Induced Pluripotent Stem Cell, Embryonic Fibroblasts, hES cells H1, hES cells H9, somatic cells during chemical reprogramming stage I, somatic cells during chemical reprogramming stage II, somatic cells during chemical reprogramming stage II without 5azac, somatic cells during chemical reprogramming stage II without JNKIN8] |
| SRP325428 |
| Systematic profiling of DNMT3A variants reveals protein instability mediated by the DCAF8 E3 ubiquitin ligase adaptor [Cell Line, ESC] |
| SRP321876 |
| Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states [Blood, Kidney] |
| SRP325062 |
| Cerebrospinal fluid cell-free DNA methylomes recapture pediatric medulloblastoma tissue's tumor feature [CSF, Tumor] |
| SRP324100 |
| Placental methylome reveals a 22q13.33 brain regulatory gene locus associated with autism [WGBS] [Placenta] |
| SRP324016 |
| Cerebrospinal fluid cell-free DNA methylomes subtyping pediatric medulloblastoma [Blast] |
| SRP323990 |
| Identification of DNA Methylation Predicts Onset of PTSD and Depression Following Trauma [PBMC] |
| SRP323032 |
| Mapping the glucocorticoid gene regulatory network and alterations that contribute to steroid resistance in childhood acute lymphoblastic leukemia [WGBS] [ALL] |
| SRP321573 |
| Conservation and divergence of DNA methylation patterns and functions in vertebrates [Primary Dermal Fibroblasts, Psoas Muscle] |
| SRP320538 |
| Dynamic patterns of DNA methylation in the normal prostate epithelial differentiation program are targets of aberrant methylation in prostate cancer [BiSulfite-seq] [Cell Line] |
| SRP319892 |
| Expanding highly homogenous population of human primordial germ cell like cells in long-term and feeder-free culture condition [WGBS] [EGC, freshly isolated human PGCLC, iPSC, long-term culture human PGCLC c56, long-term culture human PGCLC c63, long-term culture human PGCLC c71, long-term culture human PGCLC c84] |
| SRP318399 |
| DNA methylation profiles of four immune cell types from MS patients and healthy controls [Blood] |
| SRP316873 |
| Whole-Genome Bisulfite Sequencing of Nasopharyngeal Carcinoma and Nasopharyngeal Epithelial Tissues [SeqCapEpi] [Cell Line, Methylation Control] |
| SRP059772 |
| Whole genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver [oxBS-Seq and BS-Seq] [Liver, Lung] |
| SRP316059 |
| NSCLP-Twins [Saliva DNA] |
| SRP315878 |
| Homo sapiens Epigenomics [Blood, Bone Marrow] |
| SRP315039 |
| DNA methylome and genome sequencing of human ovarian epithelial cell line [Ovarian Epithelium] |
| SRP314963 |
| The proline and serine rich protein PROSER1 mediates O-GlcNAcylation of TET2 to regulate DNA demethylation on UTX-dependent enhancers and CpG islands [WGBS] [Embryonic Kidney] |
| SRP059433 |
| Gender Differences in Global but not Targeted Demethylation in iPSC Reprogramming [BS seq AIDKO MEF1, BS seq ESC 1, BS seq ESC 2, BS seq ESC 3, BS seq d6 Thy1 positive 1, BS seq d6 Thy1 positive 2, BS seq d6 Thy1 positive 3, Fibroblast, MEF, Reprogramming Fibroblast, iPSC] |
| SRP059313 |
| UPF : Methylation_primates [Blood] |
| SRP059289 |
| Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules [DNA methylation] [Stomach, hepatoctes induced by differentiation of hiMEPs, hiMEPs derived from GECs by reprogramming] |
| SRP310254 |
| DNMT3A haploinsufficiency causes dichotomous DNA methylation defects at enhancers in mature human immune cells [BiSulfite-seq] [hESC-derived macrophages] |
| SRP268755 |
| Probing the signaling requirements for naïve human pluripotency by high-throughput chemical screening [WGBS] [ESC, Nave hESC] |
| SRP309472 |
| Epigenetic crosstalk [KYSE-30] |
| SRP309354 |
| Stable DNMT3L Overexpression in SH-SY5Y Neurons Recreates a Facet of the Genome-Wide Down Syndrome DNA Methylation Signature [SH-SY5Y] |
| SRP309314 |
| Epigenomics of nasal mucosa in children with acute respiratory illness [Nasal Mucosa] |
| SRP058102 |
| Analysis of DNA Methylation in replication and cell cycle arrest. [Primary Dermal Fibroblasts] |
| SRP050499 |
| The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells [Brain, Gonadal Somatic Cells, Heart, Primordial Germ] |
| SRP308854 |
| Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters [WGBS] [umbilical cord-derived mesenchymal stem cells (PCS-500-010 lot #63216949), umbilical cord-derived mesenchymal stem cells (PCS-500-010 lot #63216950)] |
| SRP308810 |
| Genome-wide Programmable Transcriptional Memory by CRISPR-based Epigenome Editing [HEK293T] |
| SRP308490 |
| Pan-cancer predictions of transcription factors mediating aberrant DNA methylation [HCC1954, hTERT-HME1] |
| SRP304712 |
| Epigenome profiling in gastric carcinogenesis by whole genome bisulfite sequencing [Normal, Stomach, Tumor] |
| SRP304684 |
| Inherent genomic properties underlie the epigenomic heterogeneity of human induced pluripotent stem cells [WGBS] |
| SRP057450 |
| A novel bivalent chromatin state exists at enhancers [HCT116] |
| SRP008337 |
| Role of DNMT3B in the regulation of early neural and neural crest specifiers [H9] |
| SRP008144 |
| Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment [B Cell, Cord Blood, HSPC, Neutrohphil] |
| SRP007820 |
| The DNA methylomes of a newborn and a centenarian [Blood, Cord Blood] |
| SRP007400 |
| Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates [Sperm] |
| SRP006774 |
| Increased methylation variation in epigenetic domains across cancer types |
| SRP006728 |
| Genome-wide DNA methylation mapping in breast cancer cells (HCC1954) and normal breast cells (HMEC) [Breast Cancer] |
| SRP003529 |
| Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells |
| SRP001720 |
| Dynamic Changes in the Human Methylome During Differentiation [ESC, Fibroblasts derived from human ESCs, Newborn Human Foreskin Fibroblasts] |
| SRP000941 |
| UCSD Human Reference Epigenome Mapping Project [Adipose, Adipose Tissue, Adrenal Gland, Aorta, Bladder, Cell Line, ESC, Esophagus, Gastric, IMR90, Left Ventricle, Liver, Lung, Ovary, Pancreas, Psoas Muscle, Right Atrium, Right Ventricle, Sigmoid Colon, Small Intestine, Spleen, Thymus] |
| ERP139499 |
| Whole genome bisulfite sequencing of liver samples of five mammals (human, rhesus macaque, mouse, rat and dog) [Liver] |
| ERP135424 |
| Single-cell methylation profiling of a twin pair discordant for common variable immunodeficiency [Memory B-Cell] |
| ERP135121 |
| Whole Genome Bisulfite Sequencing (WGBS) of the SH-SY5Y human neuroblastoma cell line [Bone Marrow] |
| ERP009555 |
| Effects of HIST1H2ac knockdown on the DNA methylation landscape of breast cancer cell line MCF-7 [MCF-7] |
| ERP130693 |
| Performance comparison and in-silico harmonisation of commercial platforms for DNA methylome analysis by targeted bisulfite sequencing |
| ERP129475 |
| DNA Methylation signature in mononuclear cells and proinflammatory cytokines in Meniere Disease [Blood] |
| ERP109780 |
| Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the AML cell line HL-60/S4 [HL60] |
| ERP127251 |
| Single Cell Multi-Omics of Human Preimplantation Embryos Demonstrates Susceptibility to Excess Glucocorticoid Exposure(BSseq part) [Whole Organism] |
| ERP123063 |
| Whole genome DNA methylation analysis of human embryonic stem cells |
| ERP122802 |
| Whole genome DNA methylation analysis of human testicular germ cells |
| ERP122363 |
| No evidence for intervention-associated DNA methylation changes in monocytes of patients with posttraumatic stress disorder or anorexia nervosa |
| ERP005229 |
| Whole-genome Bisulfite Sequencing for Methylation Analysis of human monocytes |
| ERP117337 |
| Whole genome DNA methylation analysis of sperm DNA from normozoospermic and oligoasthenoteratozoospermic men |
| ERP004221 |
| Genome-wide methylome profiling of normal breast and breast tumors [Breast, Breast Cancer] |
| ERP114912 |
| Genome-wide Analysis of the Nucleosome Landscape in Individuals with Coffin-Siris Syndrome |
| ERP110315 |
| Single molecule sequencing and assembly of flow sorted Y chromosome from HG02982 [Lymphoblastoid Cell Line] |
| ERP110208 |
| Whole genome methylation analysis of sperm and blood from young and old men. [Blood, Sperm] |
| ERP106410 |
| An integrated genomic analysis of L1 retrotransposon mosaicism in the brain [Hippocampus] |
| ERP109664 |
| Bisulphite-seq to investigate the proto CpG island methylator phenotype of sessile serrated adenoma/polyps, dataset 2 [Colon] |
| ERP109610 |
| Bisulphite-seq to investigate the proto CpG island methylator phenotype of sessile serrated adenoma/polyps [Colon] |
| ERP107813 |
| Bisulfite-seq of synovial biopsies from rheumatoid arthritis patients [Synovial Membrane] |
| ERP010942 |
| We present the first genome-scale analysis of the effect of CpG methylation on DNA-binding of TFs. [Embryo, GP5D, LHSAR cell with HOXB13 transduced, Lhsar, LoVo, VCap] |
| ERP018009 |
| Base resolution maps of mutations, 5-methylcytosine and 5-hydroxymethylcytosine, and transcriptome of blood, tumour and margin samples from a glioblastoma multiforme patient [Brain] |
| ERP014223 |
| DNA methylation profiling of human naive embryonic stem cells [Embryo] |
| ERP011276 |
| 5Aza and TSA treatment of MCF7 cells (BS-seq) [Breast] |
| ERP008742 |
| Germ_cell_methylation_dynamics [308-D5 TE Embryo 1, 308-D5 TE Embryo 2, 693-D6 TE Embryo 2, A3 mPGCLC1, BS treated DNA PBAT library, C3 mPGCLC2, D2 mPGCLC1, D3 mPGCLC2, E3 mPGCLC2, ESC, F1 hPGCLC1, F2 mPGCLC1, F3 mPGCLC2, G2 mPGCLC1, G3 mPGCLC2, H3 mPGCLC2, P11(4), P14(2), P8(3), PRGp8 4, Passage 10 Sort 2, Passage 10 Sort 3, Passage 10 Sort 4, S6EOSKSR 1, S6EOSKSR 3, S6EOSp15 1, S6EOSp15 2, S6EOSp5 3, S6EOSp9 1, S6EOSp9 2, S6EOSp9 3, hES1, hES2, hES3, hEpiLC 2016214 2, hEpiLC 201635, hKSR2, hKSR3, mEpiLC E14 d1 1, mEpiLC E14 d2 2] |
| ERP144942 |
| Validation of differentially methylated DNA regions in colorectal precancerous lesions. [Colon] |
| DRP012061 |
| Epigenetic regulation by nitrosative stress as a potential mechanism of long COVID [Small Airway Epithelial] |
| DRP014307 |
| Transcriptomics and DNA methylome of human iPS cell lines [T-iPS, iPS] |
| DRP008243 |
| Transcriptome and methylome analyses of trophoblast stem-like cells derived from primed human embryonic stem cells [TSLprimed] |
| DRP007001 |
| Development of long-read whole genome methylation sequencing method using the enzymatic base conversion and the nanopore sequencing [BT-474, MDA-MB-231] |
| DRP007963 |
| Whole genome bisulfite sequencing of colorectal cancer [Metastatic Cancerous Tissue Obtained From Distant Lymph Node Metastasis, Metastatic Cancerous Tissue Obtained From Hepatic Metastasis, Metastatic Cancerous Tissue Obtained From Lung Metastasis, Primary Cancerous] |
| DRP006124 |
| DNA methylome analyses and expression analysis for malignant glioma harbouring H3F3A gene mutation [Glioma] |
| DRP004736 |
| Generation of human oogonia from induced pluripotent stem cells in vitro [PGCLC, aggregate cultured PGCLC, iMeLC, iPSC] |
| DRP003407 |
| Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing [EpiLC, IMR90, Spermatogonia] |
| DRP001914 |
| Omics catalogue of lung adenocarcinoma cell lines [Cell Line] |
| Common |
| Common methbase tracks for the hg38 assembly |
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| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| Chromosome Band |
| Chromosome Bands Localized by FISH Mapping Clones |
| Short Match |
| Perfect Matches to Short Sequence () |
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| NCBI RefSeq |
| RefSeq genes from NCBI |
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| Cactus 241-way |
| Cactus Alignment & Conservation of Zoonomia Placental Mammals (241 Species) |
| Multiz 470-way |
| Multiz Alignment & Conservation (470 mammals) |
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