Sample Summary heart_right_ventricle Summary Track Settings
 
Roadmap Epigenome heart_right_ventricle Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
List subtracks: only selected/visible    all    ()  
     ENCFF006WQG_H3K27ac  ENCFF006WQG H3K27ac    Data format 
     ENCFF015HNH_polyA_plus_RNA-seq  ENCFF015HNH polyA_plus_RNA-seq    Data format 
     ENCFF041DRX_H3K4me3  ENCFF041DRX H3K4me3    Data format 
     ENCFF043JJO_H3K27ac  ENCFF043JJO H3K27ac    Data format 
     ENCFF046NUS_H3K27ac  ENCFF046NUS H3K27ac    Data format 
     ENCFF067VFV_polyA_plus_RNA-seq  ENCFF067VFV polyA_plus_RNA-seq    Data format 
     ENCFF069RMH_H3K4me3  ENCFF069RMH H3K4me3    Data format 
     ENCFF154JOJ_H3K9me3  ENCFF154JOJ H3K9me3    Data format 
     ENCFF217AXZ_H3K9me3  ENCFF217AXZ H3K9me3    Data format 
     ENCFF217IRO_H3K27me3  ENCFF217IRO H3K27me3    Data format 
     ENCFF265EPN_H3K36me3  ENCFF265EPN H3K36me3    Data format 
     ENCFF288VHS_H3K4me1  ENCFF288VHS H3K4me1    Data format 
     ENCFF292XMX_H3K36me3  ENCFF292XMX H3K36me3    Data format 
     ENCFF316SUQ_H3K27ac  ENCFF316SUQ H3K27ac    Data format 
     ENCFF336JIY_H3K36me3  ENCFF336JIY H3K36me3    Data format 
     ENCFF365OWF_H3K9me3  ENCFF365OWF H3K9me3    Data format 
     ENCFF394KBN_H3K36me3  ENCFF394KBN H3K36me3    Data format 
     ENCFF402PAI_WGBS  ENCFF402PAI WGBS    Data format 
     ENCFF411GXR_H3K4me1  ENCFF411GXR H3K4me1    Data format 
     ENCFF411MUC_H3K36me3  ENCFF411MUC H3K36me3    Data format 
     ENCFF468GIA_H3K36me3  ENCFF468GIA H3K36me3    Data format 
     ENCFF489PIF_H3K27me3  ENCFF489PIF H3K27me3    Data format 
     ENCFF506EWG_H3K27me3  ENCFF506EWG H3K27me3    Data format 
     ENCFF518RZI_H3K4me3  ENCFF518RZI H3K4me3    Data format 
     ENCFF518ZFC_H3K4me1  ENCFF518ZFC H3K4me1    Data format 
     ENCFF536TVZ_polyA_plus_RNA-seq  ENCFF536TVZ polyA_plus_RNA-seq    Data format 
     ENCFF577YWF_H3K36me3  ENCFF577YWF H3K36me3    Data format 
     ENCFF592FPI_H3K27ac  ENCFF592FPI H3K27ac    Data format 
     ENCFF603RHJ_H3K4me1  ENCFF603RHJ H3K4me1    Data format 
     ENCFF625PCG_H3K27ac  ENCFF625PCG H3K27ac    Data format 
     ENCFF640DMT_H3K4me1  ENCFF640DMT H3K4me1    Data format 
     ENCFF640HVL_polyA_plus_RNA-seq  ENCFF640HVL polyA_plus_RNA-seq    Data format 
     ENCFF644MVM_H3K4me3  ENCFF644MVM H3K4me3    Data format 
     ENCFF667VGW_H3K4me3  ENCFF667VGW H3K4me3    Data format 
     ENCFF670RFE_H3K4me1  ENCFF670RFE H3K4me1    Data format 
     ENCFF674PHE_H3K27me3  ENCFF674PHE H3K27me3    Data format 
     ENCFF691MVS_H3K36me3  ENCFF691MVS H3K36me3    Data format 
     ENCFF724DHO_H3K27me3  ENCFF724DHO H3K27me3    Data format 
     ENCFF732PDF_H3K4me1  ENCFF732PDF H3K4me1    Data format 
     ENCFF760DJK_polyA_plus_RNA-seq  ENCFF760DJK polyA_plus_RNA-seq    Data format 
     ENCFF778FFI_H3K4me3  ENCFF778FFI H3K4me3    Data format 
     ENCFF791FGK_H3K27ac  ENCFF791FGK H3K27ac    Data format 
     ENCFF799BTI_H3K27ac  ENCFF799BTI H3K27ac    Data format 
     ENCFF811SYB_polyA_plus_RNA-seq  ENCFF811SYB polyA_plus_RNA-seq    Data format 
     ENCFF814GOY_H3K4me1  ENCFF814GOY H3K4me1    Data format 
     ENCFF816YUE_polyA_plus_RNA-seq  ENCFF816YUE polyA_plus_RNA-seq    Data format 
     ENCFF836RWI_H3K9me3  ENCFF836RWI H3K9me3    Data format 
     ENCFF845QWZ_H3K27me3  ENCFF845QWZ H3K27me3    Data format 
     ENCFF891BZG_H3K27me3  ENCFF891BZG H3K27me3    Data format 
     ENCFF893NOP_H3K27me3  ENCFF893NOP H3K27me3    Data format 
     ENCFF894BHZ_polyA_plus_RNA-seq  ENCFF894BHZ polyA_plus_RNA-seq    Data format 
     ENCFF962SOI_H3K4me3  ENCFF962SOI H3K4me3    Data format 
     ENCFF986CZC_H3K4me3  ENCFF986CZC H3K4me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:heart_left_ventricle
genome:hg38
Data schema/format description and download

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF